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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8678304_8681201_R

Intron Information:

Intron Rank:
154508
Intron Class:
major
Intron Phase:
Intron Coordinates:
8678304 - 8681201
Intron Length:
2898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TACCTTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TATCCAGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
70.2
0.45
0.9
62.8
38.4
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
50.2
0.08
2.2
76.1
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030655
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031565
8677534 - 8743815
66282