About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8679161_8685735_F

Intron Information:

Intron Rank:
141622
Intron Class:
major
Intron Phase:
Intron Coordinates:
8679161 - 8685735
Intron Length:
6575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TATAAAATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.8
0.71
0.8
73.3
35.8
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
45.4
-0.3
2
60.22
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026272
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032509
8678929 - 8686808
7880