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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8681318_8731028_R

Intron Information:

Intron Rank:
154503
Intron Class:
major
Intron Phase:
Intron Coordinates:
8681318 - 8731028
Intron Length:
49711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTAATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCTCTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.1
34.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.4
0.64
0.8
73.2
36.7
Minor 5ss
34.8
-1.7
3.1
45.7
42.5
Minor BPS
61.9
0.45
1.7
75.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030655
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031565
8677534 - 8743815
66282
ENSAPLT00000019086
8580580 - 8731146
150567