About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8806919_8818219_R

Intron Information:

Intron Rank:
143090
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
8806919 - 8818219
Intron Length:
11301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCTCT
5'SS Class:
weak_major
3'SS Sequence:
CTTTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAG
U12 Branch Point Sequence:
TTTTTTTTATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
66.8
39.3
Major BPS
48
-0.1
1.6
55.6
40.2
Major PPT
91
0.92
0.6
87.6
22.9
Minor 5ss
59.6
0.32
2.3
71.1
41.3
Minor BPS
58.2
0.12
1.7
67.78
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024329
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030777
8782411 - 8818548
36138