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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8866123_8866326_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8866123 - 8866326
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
GTTTACCAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTGTGTTTACCA
Flanking Amino Acid:
MQNDKYNLSDALKKL
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
65.7
0.35
1
60.5
40.2
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
54.7
0.14
2
70.38
42.6

Associated Gene:

Gene:
RAP1GDS1
Ensembl Gene ID:
ENSAPLG00000016234
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016958
8865841 - 8928387
62547