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Intron Name: Anas_platyrhynchos_platyrhynchos_4_8866435_8884573_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8866435 - 8884573

Intron Length:

18139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTTCT

5'SS Class:

major

3'SS Sequence:

ATGTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTCAT

U12 Branch Point Sequence:

TTTTGTGTGATG

Flanking Amino Acid:

DCLLQALAQNNTETSEKIQK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

75.5

Major BPS

68.2

0.45

1.1

69.4

37.7

Major PPT

80.5

0.69

0.9

77.4

41.2

Minor 5ss

-0.5

2.8

65.4

39.4

Minor BPS

45.9

-0.4

2.4

61.34

41.8

Associated Gene:

Gene:

RAP1GDS1

Ensembl Gene ID:

ENSAPLG00000016234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021811

8865077 - 8928927

63851

ENSAPLT00000016958

8865841 - 8928387

62547