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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8911495_8913897_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8911495 - 8913897
Intron Length:
2403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
LVAFGNLAELESSKEQFAYT
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
68
42.9
Major BPS
75
0.62
1
65.3
41.5
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
34.7
-1.7
2.8
39.7
39.7
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
RAP1GDS1
Ensembl Gene ID:
ENSAPLG00000016234
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021811
8865077 - 8928927
63851
ENSAPLT00000016958
8865841 - 8928387
62547