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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8926404_8927973_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
8926404 - 8927973
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTCCATCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GTGACCTTAAGT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
76.1
0.59
0.9
69.1
36.7
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
65.3
0.56
1.7
77.58
44.4

Associated Gene:

Gene:
TSPAN5
Ensembl Gene ID:
ENSAPLG00000016142
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017640
8926228 - 9007073
80846