Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8935499_8938586_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8935499 - 8938586

Intron Length:

3088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATATC

5'SS Class:

strong_major

3'SS Sequence:

TGAATTTCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TCTACTTGAATT

Flanking Amino Acid:

GIFIGIALLQLYCIGLLTCH

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

87.7

26.2

Major BPS

82.1

0.8

71.6

36.4

Major PPT

76.1

0.59

0.9

69.9

41.1

Minor 5ss

39.6

-1.2

2.9

43.3

Minor BPS

63.8

0.51

1.5

77.29

39.6

Associated Gene:

Gene:

TSPAN5

Ensembl Gene ID:

ENSAPLG00000016142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016858

8935275 - 9007073

71799