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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8938019_8938586_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8938019 - 8938586
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
AATGAATGAACT
Flanking Amino Acid:
GIFIGIALLQIFGICLAQNL
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
85.3
0.79
0.8
77.4
36.9
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
47
-0.1
2
67.37
42.3

Associated Gene:

Gene:
TSPAN5
Ensembl Gene ID:
ENSAPLG00000016142
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018585
8936595 - 9007098
70504