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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8938704_8938827_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8938704 - 8938827
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TTCTCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATAATGACCC
Flanking Amino Acid:
QCGYDARQKPEVDQQIVIYT
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.9
39.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
79.1
0.66
0.9
76.5
32
Minor 5ss
47.5
-0.2
2.9
72.4
38
Minor BPS
43.7
-0.5
2
57.38
40.3

Associated Gene:

Gene:
TSPAN5
Ensembl Gene ID:
ENSAPLG00000016142
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018585
8936595 - 9007098
70504
ENSAPLT00000017640
8926228 - 9007073
80846
ENSAPLT00000016858
8935275 - 9007073
71799