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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8942052_8943895_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8942052 - 8943895
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATACTGAAAGT
Flanking Amino Acid:
QNLIDFTQEYWQCCGAFGAD
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
42.7
-0.4
2.4
65.16
45.5

Associated Gene:

Gene:
TSPAN5
Ensembl Gene ID:
ENSAPLG00000016142
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018585
8936595 - 9007098
70504
ENSAPLT00000017640
8926228 - 9007073
80846
ENSAPLT00000016858
8935275 - 9007073
71799