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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_8944067_8945382_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8944067 - 8945382
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTTCTTCATA
Flanking Amino Acid:
LRENTFLLKFFSVFLGIIFF
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
70.9
39.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
87.4
0.84
0.6
84.3
23.8
Minor 5ss
38.7
-1.3
2.8
51.8
39.1
Minor BPS
70.6
0.64
1.7
82.43
32.9

Associated Gene:

Gene:
TSPAN5
Ensembl Gene ID:
ENSAPLG00000016142
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018585
8936595 - 9007098
70504
ENSAPLT00000017640
8926228 - 9007073
80846
ENSAPLT00000016858
8935275 - 9007073
71799