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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_900762_901965_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
900762 - 901965
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACATT
5'SS Class:
major
3'SS Sequence:
ATTTGTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCCTGTTTATGT
Flanking Amino Acid:
MDFHRFYFENALSKSNKPIH
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.9
38.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.2
0.61
0.9
69.9
40.9
Minor 5ss
44.8
-0.6
3.1
63
42.8
Minor BPS
45
-0.3
2.2
62.39
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029591
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040919
900529 - 942641
42113