About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9008313_9008466_R

Intron Information:

Intron Rank:
135549
Intron Class:
major
Intron Phase:
Intron Coordinates:
9008313 - 9008466
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCGT
U12 Branch Point Sequence:
TCTCTCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
77.4
0.62
1
78.4
27.8
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
64.1
0.3
1.5
65.72
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020350
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022339
9007742 - 9015946
8205