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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9008561_9015675_R

Intron Information:

Intron Rank:
135550
Intron Class:
major
Intron Phase:
Intron Coordinates:
9008561 - 9015675
Intron Length:
7115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
GCTCTCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TATTACTGATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
77.1
0.61
0.8
68.6
37.2
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
50.2
0
1.9
66.81
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020350
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022339
9007742 - 9015946
8205