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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9030597_9033453_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9030597 - 9033453
Intron Length:
2857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTTGT
5'SS Class:
major
3'SS Sequence:
TTGTATTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATTCTACA
Flanking Amino Acid:
ATKSGSTTKNRMLWEKAESC
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
72.6
39.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.7
0.74
0.9
76.8
37.1
Minor 5ss
44.4
-0.6
2.5
59.5
44.9
Minor BPS
47.6
-0.2
2
64.32
41.9

Associated Gene:

Gene:
EIF4E
Ensembl Gene ID:
ENSAPLG00000015915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016610
9030545 - 9052100
21556