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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_903304_924666_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
903304 - 924666
Intron Length:
21363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TCCATTTTAAGA
Flanking Amino Acid:
NTTIEDEDVKARKQEIIKVT
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
78.3
0.64
0.8
70.6
35.8
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
51.1
0.03
1.7
58.48
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029591
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040919
900529 - 942641
42113