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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9035117_9037572_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9035117 - 9037572
Intron Length:
2456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TAATCTTTATTT
Flanking Amino Acid:
SDLDRFWLETLLCLIGESFD
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.9
39.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85
0.79
0.7
80.9
30.8
Minor 5ss
47.5
-0.2
2.9
72.4
38
Minor BPS
65.4
0.56
1.5
77.84
38.8

Associated Gene:

Gene:
EIF4E
Ensembl Gene ID:
ENSAPLG00000015915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016610
9030545 - 9052100
21556