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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9037687_9039559_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9037687 - 9039559
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
CTGTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TCTGATTTAACT
Flanking Amino Acid:
MPGCDYSLFKDGIEPMWEDE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
82.7
0.74
0.9
77.1
36
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
65.9
0.58
1.6
80.33
41.9

Associated Gene:

Gene:
EIF4E
Ensembl Gene ID:
ENSAPLG00000015915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016610
9030545 - 9052100
21556