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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9041668_9043844_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9041668 - 9043844
Intron Length:
2177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATAT
Flanking Amino Acid:
EQYIKHPLQNRWALWFFKND
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.2
0.77
0.6
82.6
22
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
65.1
0.55
1.6
84.45
36.3

Associated Gene:

Gene:
EIF4E
Ensembl Gene ID:
ENSAPLG00000015915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016610
9030545 - 9052100
21556