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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9043952_9052082_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9043952 - 9052082
Intron Length:
8131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TTTCTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTCTTCAAAC
Flanking Amino Acid:
MATVEPETTPNPQPSE
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.2
39.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.3
0.61
0.9
74.4
34.2
Minor 5ss
34
-1.8
3.4
48.7
47
Minor BPS
61.7
0.35
1.7
71.74
39.5

Associated Gene:

Gene:
EIF4E
Ensembl Gene ID:
ENSAPLG00000015915
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016610
9030545 - 9052100
21556