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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9075152_9076425_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9075152 - 9076425
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
ATGATTTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
CTCGCTTTGACT
Flanking Amino Acid:
TGKLRPHYPLTPTRPVPSYI
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.9
36.8
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
69.1
0.43
1
67.2
43.4
Minor 5ss
42.4
-0.8
3.5
61.3
44.6
Minor BPS
63.8
0.51
1.5
74.17
43.6

Associated Gene:

Gene:
METAP1
Ensembl Gene ID:
ENSAPLG00000015750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016428
9062649 - 9088386
25738