About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9078785_9080092_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9078785 - 9080092
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGGTTA
5'SS Class:
major
3'SS Sequence:
TTTTCTAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTTCTAAATT
Flanking Amino Acid:
TEEIDHAVHLACIARNCYPS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
71.2
34.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.6
0.49
1
72.8
36.4
Minor 5ss
42.2
-0.9
3.3
57
42.9
Minor BPS
70.4
0.72
1.6
85.57
35

Associated Gene:

Gene:
METAP1
Ensembl Gene ID:
ENSAPLG00000015750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016428
9062649 - 9088386
25738