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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9080232_9082381_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9080232 - 9082381
Intron Length:
2150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTATTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAC
U12 Branch Point Sequence:
GTGTCTGGTATT
Flanking Amino Acid:
RPLQEGDIVNVDITVYRNGY
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
57
0.17
1.3
51.4
43.9
Major PPT
82.9
0.74
0.9
77.2
36.8
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
41.8
-0.5
2.3
60.75
43.7

Associated Gene:

Gene:
METAP1
Ensembl Gene ID:
ENSAPLG00000015750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016428
9062649 - 9088386
25738