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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9084865_9086016_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9084865 - 9086016
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGCTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTTTCTAACCT
Flanking Amino Acid:
HTAPNVPHYAKNKAVGVMKP
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.6
0.73
0.9
77.4
35.6
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
59.7
0.38
1.9
81.49
40.5

Associated Gene:

Gene:
METAP1
Ensembl Gene ID:
ENSAPLG00000015750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016428
9062649 - 9088386
25738