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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9086083_9086270_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9086083 - 9086270
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTAATATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTGTTTAATA
Flanking Amino Acid:
VFTIEPMICEGGWQDETWPD
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.1
0.56
0.9
67
43.7
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
67.7
0.55
1.7
77.18
34.1

Associated Gene:

Gene:
METAP1
Ensembl Gene ID:
ENSAPLG00000015750
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016428
9062649 - 9088386
25738