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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9095225_9095716_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9095225 - 9095716
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCTTCACCT
Flanking Amino Acid:
GYGAVVNTAKVEPGSTCAVF
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
76.1
0.59
0.8
70.5
35.3
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
66.5
0.6
1.8
87.98
37.6

Associated Gene:

Gene:
ADH5
Ensembl Gene ID:
ENSAPLG00000014843
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015502
9091417 - 9099069
7653