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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9097453_9098037_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9097453 - 9098037
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTACTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATCT
Flanking Amino Acid:
PPKAHEVRIKIVATAVCHTD
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.1
0.68
0.8
74.3
35.2
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
62.6
0.47
1.8
81.83
39.5

Associated Gene:

Gene:
ADH5
Ensembl Gene ID:
ENSAPLG00000014843
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015502
9091417 - 9099069
7653