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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9098140_9099057_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9098140 - 9099057
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGACAG
5'SS Class:
major
3'SS Sequence:
TGATGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCTTGTTGATG
Flanking Amino Acid:
MASGVIKCRAAVAW
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
58.6
42.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.4
0.53
0.9
70.3
41
Minor 5ss
25.4
-2.8
2.8
22.1
37
Minor BPS
49.7
-0.1
2.1
61.1
41.9

Associated Gene:

Gene:
ADH5
Ensembl Gene ID:
ENSAPLG00000014843
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015502
9091417 - 9099069
7653