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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9130880_9132681_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9130880 - 9132681
Intron Length:
1802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CAGTCACTAACT
Flanking Amino Acid:
EGFDLLRAGKSIRSVLTF*
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.8
82
33.9
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
52.2
0.15
2
71.32
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019954
9130713 - 9138427
7715
ENSAPLT00000002744
9130713 - 9140660
9948