About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9138248_9140544_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9138248 - 9140544
Intron Length:
2297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
GCTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCCAT
U12 Branch Point Sequence:
TTTTCCTTTGCT
Flanking Amino Acid:
MSTAGKVIKCKAAVLW
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
71.7
40.1
Major BPS
47.8
-0.1
1.6
58.2
48.3
Major PPT
85.2
0.79
0.8
79.9
32.1
Minor 5ss
40.5
-1.1
2.9
49
41.4
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002744
9130713 - 9140660
9948