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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9147273_9148248_R

Intron Information:

Intron Rank:
142085
Intron Class:
major
Intron Phase:
Intron Coordinates:
9147273 - 9148248
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AGATATTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
69
0.43
0.9
64.4
31.2
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
46.9
-0.1
1.8
62.47
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023779
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031202
9144414 - 9148606
4193