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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9148036_9148248_R

Intron Information:

Intron Rank:
142082
Intron Class:
major
Intron Phase:
Intron Coordinates:
9148036 - 9148248
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTGTTTGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.1
0.61
0.9
70
40.3
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
49.2
-0
2
60.45
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023779
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019791
9147727 - 9148606
880