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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9156417_9157036_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9156417 - 9157036
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTGGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACTTGGTAAAAC
Flanking Amino Acid:
RAPGFLPFMAQNGEGLADFP
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.3
74.1
38.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.9
0.65
1
69.2
46.1
Minor 5ss
31
-2.2
2.6
32.5
35
Minor BPS
40.2
-0.7
2.5
53.26
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022264
9154042 - 9161636
7595