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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9159415_9159744_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9159415 - 9159744
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATGAAGT
Flanking Amino Acid:
QRGPEREMNNRPSTKESEAS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
82.3
0.73
0.8
81
29.9
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
56.5
0.28
2
79.77
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022264
9154042 - 9161636
7595