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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9159789_9160448_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9159789 - 9160448
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCACAATT
Flanking Amino Acid:
ESEASQNMKIEKDAERILFS
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.3
0.7
0.9
73
41.6
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
54.4
0.22
1.8
78.58
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026579
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022264
9154042 - 9161636
7595