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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9167099_9169869_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9167099 - 9169869
Intron Length:
2771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGACGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TCTTTCTTGACG
Flanking Amino Acid:
NSRKVLAVNHVFEIILAYLE
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
73
0.52
1
65.3
40.8
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
74.6
0.63
1.3
73.86
39

Associated Gene:

Gene:
TRMT10A
Ensembl Gene ID:
ENSAPLG00000002768
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002809
9166697 - 9174914
8218