About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9171251_9172258_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9171251 - 9172258
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATAAT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTCTTTTAACT
Flanking Amino Acid:
ENDKGWVNWKDIQIRTEHYS
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
85.5
24.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.3
0.79
0.7
84.8
29.8
Minor 5ss
31.3
-2.1
2.9
41.5
45.1
Minor BPS
74.4
0.84
1.2
84.55
36.3

Associated Gene:

Gene:
TRMT10A
Ensembl Gene ID:
ENSAPLG00000002768
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002809
9166697 - 9174914
8218