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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9172334_9172812_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9172334 - 9172812
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTCTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTCTATGTACCT
Flanking Amino Acid:
ENRKAFHPVQFYLTSHGGQL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
73.9
0.54
1
78.8
33.5
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
46.4
-0.1
2.4
72
45.3

Associated Gene:

Gene:
TRMT10A
Ensembl Gene ID:
ENSAPLG00000002768
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002809
9166697 - 9174914
8218