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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9173673_9174612_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9173673 - 9174612
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAAGATTAATT
Flanking Amino Acid:
KQWEEQKDLRRQKRKEKRQK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
75.6
34.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.1
0.7
0.9
81.2
36.5
Minor 5ss
47.4
-0.3
3.1
66.9
44.7
Minor BPS
48.8
-0
2
68.34
42.1

Associated Gene:

Gene:
TRMT10A
Ensembl Gene ID:
ENSAPLG00000002768
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002809
9166697 - 9174914
8218