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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9178736_9183503_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9178736 - 9183503
Intron Length:
4768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GCTTTCCAAACA
Flanking Amino Acid:
IISTYSASVKGHTTGPSLSN
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
67.8
0.4
1
62.9
37.5
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
49.4
-0
2
64.11
42.3

Associated Gene:

Gene:
MTTP
Ensembl Gene ID:
ENSAPLG00000002876
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002969
9178675 - 9206405
27731