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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9187396_9188473_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9187396 - 9188473
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TAATTACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
EKTGFTSHNKILDVSTKATS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.5
0.64
0.9
74.9
39.6
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
MTTP
Ensembl Gene ID:
ENSAPLG00000002876
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002969
9178675 - 9206405
27731