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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9189507_9193287_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9189507 - 9193287
Intron Length:
3781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGATATAATG
Flanking Amino Acid:
VKSECKKCPSLSEHWKSIKE
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
83.6
29.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.5
0.69
0.9
73.9
40.4
Minor 5ss
35.5
-1.6
2.7
43.1
43.9
Minor BPS
48.5
-0.2
1.9
60.84
41.5

Associated Gene:

Gene:
MTTP
Ensembl Gene ID:
ENSAPLG00000002876
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002969
9178675 - 9206405
27731