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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9196288_9197332_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9196288 - 9197332
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
ATTTCCTGACCA
Flanking Amino Acid:
RYDPSFLTDEVKKTMNRIYH
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
69.9
0.45
1
63.5
42.2
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
66.3
0.51
1.7
78.95
37.1

Associated Gene:

Gene:
MTTP
Ensembl Gene ID:
ENSAPLG00000002876
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002969
9178675 - 9206405
27731