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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9203562_9203893_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9203562 - 9203893
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAACT
Flanking Amino Acid:
YRESKTNVKNRVAMFVSGNT
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.3
26.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.9
0.81
0.8
80.5
30.3
Minor 5ss
32.8
-2
3
40.8
45.7
Minor BPS
65.9
0.58
1.4
78.59
37.8

Associated Gene:

Gene:
MTTP
Ensembl Gene ID:
ENSAPLG00000002876
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002969
9178675 - 9206405
27731