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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9204065_9204984_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9204065 - 9204984
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGTACCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
AATTTGTTAACT
Flanking Amino Acid:
MQMDRVESPFRHSVTKYESL
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
79.8
0.67
0.9
72.6
37.5
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
65.5
0.56
2
83.19
37.7

Associated Gene:

Gene:
MTTP
Ensembl Gene ID:
ENSAPLG00000002876
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002969
9178675 - 9206405
27731