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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_924716_939636_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
924716 - 939636
Intron Length:
14921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAATTTGG
5'SS Class:
weak_major
3'SS Sequence:
TATTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATTT
Flanking Amino Acid:
RMSRFWKDKTESTESSNTTI
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.2
55.8
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.7
0.83
0.7
81
30.7
Minor 5ss
42.6
-0.8
2.8
59.3
45.1
Minor BPS
58.5
0.35
1.7
77.58
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029591
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040919
900529 - 942641
42113