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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9255809_9258423_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9255809 - 9258423
Intron Length:
2615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAA
U12 Branch Point Sequence:
TCTGCCTTGACA
Flanking Amino Acid:
EREDLYSLSVRGKDSVKHFH
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
74.5
0.77
1.3
78.22
38.8

Associated Gene:

Gene:
DAPP1
Ensembl Gene ID:
ENSAPLG00000003186
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003260
9246374 - 9267411
21038