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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_9264660_9264843_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9264660 - 9264843
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CCATTCTTAATT
Flanking Amino Acid:
YLIKQGKIVKNWKTRWFTLH
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.6
0.76
0.8
80.6
36.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
71.1
0.74
1.2
75.74
41.7

Associated Gene:

Gene:
DAPP1
Ensembl Gene ID:
ENSAPLG00000003186
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003260
9246374 - 9267411
21038